Christine Beemelmanns
Christine Beemelmanns
Academic Education and Degrees | |
Degree programme | 2001 – 2006: Diplom in Natural Sciences (Chemistry); RWTH Aachen, Master’s supervisor: Prof. C. Bolm |
Doctorate | 2007 – 2010: Ph.D. in Organic Chemistry; FU Berlin, Germany; PhD supervisor: Prof. H.-U. Reissig |
Stages of academic/professional career | |
2020: | Margaret L. and Harlan L. Goering Visiting Professor in Organic Chemistry, UW Madison, USA |
2013 – 2021: | Head of the Junior Research Group Chemical biology of microbe-host-interactions, Leibniz-Institute for Natural Product Research and Infection Biology - Hans-Knöll- Institute, Germany |
2011 – 2013: | Postdoctoral Fellow; Harvard Medical School, Harvard University, Department of Biomolecular Chemistry and Molecular Pharmacology, USA; Postdoc supervisor: Prof. J. Clardy |
2010 – 2011: | Postdoctoral Fellow; Tokyo Institute of Technology, Japan; Postdoc supervisor: Prof. K. Suzuki |
2006-2007: | Research Assistant; RIKEN, Wako-Shi, Japan; Research projects with Prof. M. Sodeoka |
Present Professional Position | |
as of 10/2022: | Full professor (W3); Saarland University and Head of department; Helmholtz Institute for Pharmaceutical Research Saarland, Saarbrücken, Germany |
01/2022 – 09/2022: | Associate professor (W2) for Biochemistry of Microbial Metabolism, Leipzig University, Germany |
Special Remarks | |
Engagement in the Research System | |
Teaching activities | |
Since 2022: | Saarland University, Faculty of Medicine, Germany; Pharmaceutical Chemistry and Biotechnology (PhD students) |
2022: | Leipzig University, Germany: Biochemistry (2nd year BSc Biochemistry, Biology, Chemistry) |
2020: | Lecturer UW Madison, USA: Organic Chemistry. (2nd year Pharmacy, Chemistry and Biotechnology students) |
2014-2021: | Lecturer, Friedrich Schiller University, Germany: Organic Chemistry (1st-year BSc Chemistry), Chemical Biology (3rd-year BSc Chemistry), Pharmaceutical Microbiology and General Biology (1st and 2nd year Pharmacy) |
Organisation of scientific meetings | |
2023, 2024 | Organisator VAAM Section Symposium Biology of Natural Product Producer (F2F symposium, 150 participants) |
2022 | Co-Organizer JAGFOS Meeting of the Humboldt Foundation, USA |
2020, 2022 | Co-Organizer JAGFOS Meeting of the Humboldt Foundation, Japan |
2017 | Co-Organizer Mini-Symposium Biosynthetic Strategies towards new Antimicrobial Natural Products (F2F, 50 participants), Germany |
2016 | Co-Organisator 25. Nachwuchswissenschaftlersymposium Bioorganische Chemie, (F2F symposium,80 participants), Germany |
Institutional responsibilities | |
Since 2024: | Topic speaker: Section Chemical Biology (DECHEMA, DPhG, GBM und GDCh) |
Since 2024: | Head of the International Graduate School Natural Product Chemistry (UdS) |
Since 2022: | Member of the Scientific Advisory Board: EU consortium MARBLES |
Since 2021: | Vice topic speaker; Section Biology of Natural Product Producer (VAAM) |
2020: | Guest Editor, Beilstein Journal of Organic Chemistry |
2018-2022 | External PhD Thesis Committee Member Microbiology Department, ETH Zürich, Switzerland |
2014-2022: | Member of the steering committee -International Leibniz Research School |
Supervision of Researchers in Early Career Phases | |
Alumni: | 10 Ph.D. students, 5 postdocs, 12 MSc students and 1 BSc students, 28 visiting scientists |
Current research group: | 9 Ph. D. students, 4 postdocs, 1 technician |
Uwe Bornscheuer
Uwe Bornscheuer
Uwe Bornscheuer has studied chemistry and got his PhD in Technical Chemistry at the University of Hannover in 1993. After a postdoctoral stay in Nagoya, Japan, he got his Habilitation at the University of Stuttgart in Technical Biochemistry in 1998. Since 1999, he is Professor at the University of Greifswald at the Institute of Biochemistry, where he leads the Department of Biotechnology & Enzyme Catalysis.
Reinhard Fischer
Reinhard Fischer
Dr. Reinhard Fischer received undergraduate and graduate training at the University of Marburg, Germany. His PhD thesis was on methanogenic archaea, supervised by Rolf Thauer. From 1992 to 1993 he was a post-doctoral fellow with William E. Timberlake at the University of Georgia, Athens, GA, USA. His research at that time focused on nuclear migration and conidiophore development in Aspergillus nidulans. Dr. Fischer established his own research group in 1994 at the University of Marburg and the Max-Planck-Institute for terrestrial Microbiology and accepted an associate professor position at the University of Karlsruhe in 2004. He was promoted to a full professor at the Karlsruhe Institute of Technology (KIT) in 2008.
His research focuses on different aspects of basic and applied fungal biology using A. nidulans, Alternaria alternata and the nematode-trapping fungus Arthrobotrys flagrans as model systems. He has graduated 53 Ph.D. students and supervised more than 100 Bachelor- and Master theses. He served for the German Research foundation (DFG) as member of the microbiology panel for 8 years and for the Studienstiftung des deutschen Volkes for 12 years. He has been Vice Dean and Dean of the Faculty of Chemistry and Biosciences. Information about the Fischer lab can be found here: https://www.iab.kit.edu/microbio/
Ralf Heermann
Ralf Heermann
Diploma degree in Biology and doctorate in Microbiology.
2001-2004 Postdoc, University of Osnabrück and TU Darmstadt
2004-2010 Wissenschaftlicher Assistent and habilitation in Microbiology at Ludwig-Maximilians-University Munich
2010-2018 Akademischer (Ober-)Rat and research group leader at LMU
Since 2018 University Professor of Microbiology at the Johannes Gutenberg University of Mainz an since 2021 joint Professor at the Institute for Biotechnology and Drug Research (IBWF) in Mainz
Katharina Höfer
Katharina Höfer
Katharina Höfer is a Fellow of the LOEWE Center for Synthetic Microbiology (SYNMIKRO) and affiliated Max Planck Research Group Leader at the Max Planck Institute for Terrestrial Microbiology in Marburg, Germany. Katharina has been awarded a LOEWE top professorship at the Philipps University of Marburg. She is an associated faculty Member of the Chemistry Faculty, University Marburg, vice-spokesperson of a DFG-funded Research Training Group 2937 and ERC Starting Grant awardee. She is a biotechnologist well known for her pioneering discovery and functional characterization of NAD-capped RNAs in bacteria and bacteriophages.
Lisa Maier
Lisa Maier
Lisa Maier is a trained biochemist and microbiologist. She earned her PhD from the Institute of Microbiology at ETH Zurich in 2014. During her postdoctoral work in Nassos Typas' lab at EMBL Heidelberg, she developed high-throughput methods to systematically investigate drug-microbiome interactions. Since 2019, she has led her independent research group at the University Hospital Tübingen, which expanded into a full professorship in 2022. In her lab, she studies how medicinal drugs from various therapeutic classes interact with gut microbes and how these interactions affect the host.
Bettina Nestl
Bettina Nestl
Bettina Nestl received her Ph.D. in Organic and Bioorganic Chemistry in 2007 in the group of Prof. Kurt Faber at the University of Graz, Austria. Following her Ph.D. studies, she moved to the University of Manchester, UK, to complete a postdoc with Prof. Nicholas J. Turner. After her postdoc, she started with Prof. Bernhard Hauer as a research group leader in biocatalysis at the University of Stuttgart, Germany. Her research interests focused on developing and engineering enzymatic catalysts for novel chemical reactions. In 2020, she habilitated at the University of Stuttgart. In the same year, she joined the biotech start-up Innophore in Graz, where she is currently Senior Scientist and COO. The company Innophore, based in Graz and San Francisco, uses its proprietary AI-based platform to search, discover and develop new proteins for the biotech and pharmaceutical industries.
Kai Papenfort
Kai Papenfort
Department | University of Jena, Institute of Microbiology |
Winzerlaer Str. 2, D-07745 Jena, Germany www.papenfortlab.org kai.papenfot@uni-jena.de, phone +49-3641-949-311 | |
Education | |
2010 | Dr. rer. nat., Humboldt University, Berlin, Germany |
2005 | Diplom Biology, University of Marburg, Germany |
Positions held | |
2019-present | Full Professor and Chair of General Microbiology, University of Jena, Germany |
2015-2019 | Associate Professor, Ludwig Maximilians University, Munich, Germany |
2012-2015 | HFSP Fellow, Department of Molecular Biology, Princeton University, USA |
2010-2012 | Postdoc, Institute of Molecular Infection Biology, University of Würzburg, Germany |
Research interests
The Papenfort lab studies the molecular principles underlying quorum sensing, virulence, and stress response in the major human pathogen, Vibrio cholerae and various related pathogens. We are particularly interested in regulatory mechanisms involving non-coding RNA and RNA-binding proteins, as well as the role of small proteins in microbial pathogens. Further we develop and characterize synthetic RNAs regulators that can be employed to address fundamental aspects in biology, as well as questions in biotechnology and phage biology.
Awards & Honours
ERC Consolidator Grant (2023), Vallee Scholar Award (2019), ERC Starting Grant (2017), Research Award of the Peter und Traudl Engelhorn Foundation (2017), HFSP Career Development Award (2016), Elected Member of the Bavarian Academy of Sciences and Humanities (Young Scholars‘ Programme; 2016-2019), Postdoc Award of the Robert-Koch-Society (2014), HFSP Post-Doctoral Fellowship (2012-2015), VAAM PhD Award (2011), PhD fellowship Boehringer Ingelheim Fonds (2007-2009)
Current editor positions and editorial boards
PLoS Genetics, Molecular Microbiology, RNA Biology, microLife, Journal of Bacteriology, Microbes & Infection
Uwe Sauer
Uwe Sauer
Uwe Sauer is a trained microbiologist with a PhD from the University of Göttingen in 1993. Since 2006 he is professor for systems biology at the ETH Zurich, focussing on fundamental questions related to microbial metabolism. His lab combines modeling with quantitative experimentation, in particular mass spectrometry-based methods for 13C-flux analysis and high-throughput metabolomics. His main research focus is identification and quantification of i) the key regulation mechanisms that control microbial metabolism and ii) metabolic interactions in microbial communities.
Susan Schlimpert
Susan Schlimpert
Department of Molecular Microbiology, John Innes Centre, Norwich, NR4 7UH, United Kingdom. E-mail: susan.schlimpert@jic.ac.uk
Susan Schlimpert is a Group Leader at the John Innes Centre in the UK. She was trained as a bacterial cell biologist at the Max Planck Institute for Terrestrial Microbiology (Germany), where she worked on cell division and cellular differentiation in Caulobacter crescentus with Martin Thanbichler. She then joined Mark Buttner’s research group at the John Innes Centre (UK) with a Leopoldina Postdoctoral Scholarship to study Streptomyces cell division. In 2019, she received a Royal Society University Fellowship to launch her independent career at the John Innes Centre. Her lab studies bacterial multicellular development, with a particular focus on cell division and cellular differentiation in actinobacteria, including Streptomyces and Mycobacteria.
Barrie Wilkinson
Barrie Wilkinson
Barrie Wilkinson is a Group Leader in Molecular Microbiology at the John Innes Centre (JIC) and the Centre for Microbial Interactions in Norwich UK where his lab uses chemical biology and genetic methods to discover new bacterial specialised metabolites and study their biosynthesis, and to probe the role these molecules play in the environment. They also develop tools and methods to aid specialised metabolite discovery and rational bioengineering, and to identify the biological targets and mechanism of action of antibacterial molecules. Since 2019 he has been the lead of JICs Institute Strategic Programmes Molecules from Nature and subsequently Harnessing Biosynthesis for Sustainable Food & Health.
Prior to joining JIC Barrie spent 16 years in the pharmaceutical and biotechnology industry, first at GlaxoWellcome (now GSK) and then as VP for Research & Development at Biotica Technology Ltd, a UK biotechnology company exploiting polyketide specialised metabolites as leads for pharmaceutical and agrochemical R&D. In 2013 he co-founded Isomerase Therapeutics Ltd to develop specialised metabolites as therapeutics targeted at peptidyl-prolyl cis-trans isomerases. He was trained at the Universities of Leeds (BSc in chemistry & PhD with Dr Richard B. Herbert), Washington (postdoc with Prof Heinz G. Floss) and Cambridge (postdocs with Prof Jim Staunton and Prof Peter F. Leadlay).
Jörg Vogel
Jörg Vogel
Department | University of Würzburg and Helmholtz Institute for RNA-based Infection Research |
Josef-Schneider-Strasse 2 / D15, D-97080 Würzburg, Germany www.helmoltz-hiri.de, www.imib-wuerzburg.de joerg.vogel@uni-wuerzburg.de, phone +49-931-3182-575 | |
Education | |
1999 | Dr. rer. nat., Humboldt University, Berlin, Germany |
1997 | Diplom Biochemistry, Humboldt University |
1994-1995 | Undergraduate Biochemistry, Imperial College London, UK |
Positions held | |
2017-present | Director, Helmholtz Institute for RNA-based Infection Research, Würzburg, Germany |
2009-present | Director and Full Professor, Faculty of Medicine, Institute of Molecular Infection Biology, University of Würzburg, Germany |
2004-2010 | Max Planck Research Group Leader, MPI for Infection Biology, Berlin, Germany |
2002-2003 | EMBO Fellow, Hebrew University, Hadassah Medical School, Jerusalem, Israel |
2000-2001 | Postdoc, Department of Cell & Molecular Biology, Uppsala University, Sweden |
Research interests
The Vogel lab strives to understand the full spectrum of noncoding RNA and RNA-binding proteins in bacterial pathogens and in members of the human microbiome. We develop new RNA-seq based techniques to rapidly capture the RNA world of any microbe, ideally at the level of single cells, and understand how and why bacteria use RNA as a regulator as they infect humans. We ask basic mechanistic questions of RNA Biology but also work on RNA-centric manipulations of the microbiota.
Awards & Honours
Elected to Bavarian Academy of Sciences and Humanities (2023), Feldberg Prize (2019), Gottfried Wilhelm Leibniz Award, DFG (2017), Honorary Professor, Imperial College London (2016), Elected to European Academy of Microbiology (2015), German National Academy of Sciences (2013), American Academy of Microbiology (2013), EMBO Member (2011), DGHM Senior Scientist Award (2011), VAAM Research Award (2010)
Current editor positions and editorial boards
Molecular Cell, EMBO Journal, RNA, Nucleic Acids Research, Molecular Microbiology, mBio, microLife
Selected current committee work
2021 - President, European Academy of Microbiology (EAM)
2018 - Scientific Advisory Board, DFG NGS Competence Centers
2016 - Genome Editing Committee, German National Academy of Sciences
Five selected publications
Stapels DAC, Hill PWS, Westermann AJ, Fisher R, Thurston TL, Saliba AE, Blommestein I, Vogel J, Helaine S (2018)
Salmonella persisters undermine host immune defences during antibiotic treatment
Science 362(6419):1156-1160
Westermann AJ, Förstner KU, Amman F, Barquist L, Chao Y, Schulte LN, Müller L, Reinhardt R, Stadler PF, Vogel J (2016)
Dual RNA-seq unveils noncoding RNA functions in host-pathogen interactions
Nature 529:496-501
Papenfort K, Sun Y, Miyakoshi M, Vanderpool CK, Vogel J (2013)
Small RNA-mediated activation of sugar phosphatase mRNA regulates glucose homeostasis
Cell 153:426–437
Deltcheva E, Chylinski K, Sharma CM, Gonzales K, Chao Y, Pirzada ZA, Eckert MR, Vogel J, Charpentier E (2011)
CRISPR RNA maturation by trans-encoded small RNA and host factor RNase III
Nature 471(7340):602-7
Sharma CM, Hoffmann S, Darfeuille F, Reignier J, Findeiß S, Sittka A, Chabas S, Reiche K, Hackermüller J, Reinhardt R, Stadler PF,
Vogel J (2010)
The primary transcriptome of the major human pathogen Helicobacter pylori
Nature 464(7285)250-255